Dear Hailey,
I haven’t looked at your files in detail, but the format of the WAMIT-generated output files (*.1, *.3, and *.hst for first order, etc.) needed by HydroDyn can be found in Chapter 4 of the WAMIT User’s Manual, available online: wind.nrel.gov/nwtc/docs/HydroDyn_Manual.pdf.
An error regarding the “FF wind array was exhausted” has been discussed many times on this forum e.g.: Error: FF wind array was exhausted - #6 by Jason.Jonkman.
I hope that helps.
Best regards,